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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs9876781 1 rs7636782 chr3:48421387 TREX1 chr3:48501186-48509043:+ -0.27 -4.18 6.46E-5 Longevity
THYM cis rs10935120 1 rs7637227 chr3:134244155 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs7637227 chr3:134244155 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs344081 1 rs7639514 chr3:156576067 LEKR1 chr3:156544076-156763918:+ -0.72 -4.3 4.1E-5 Bone mineral density
THYM cis rs10935120 1 rs7645295 chr3:134307734 ANAPC13 chr3:134196547-134204865:- 0.55 7.47 3.94E-11 Height
THYM cis rs10935120 1 rs7645295 chr3:134307734 CEP63 chr3:134204575-134293852:+ 0.43 6.36 7.17E-9 Height
THYM cis rs9815354 1 rs7646144 chr3:41853125 ULK4 chr3:41288091-42003660:- 0.91 9.16 1.01E-14 Diastolic blood pressure
THYM cis rs9815354 1 rs76471037 chr3:41799414 ULK4 chr3:41288091-42003660:- 1 10.7 5.35E-18 Diastolic blood pressure
THYM cis rs9815354 1 rs7648357 chr3:41849670 ULK4 chr3:41288091-42003660:- 1.03 11 1.24E-18 Diastolic blood pressure
THYM cis rs9815354 1 rs7648578 chr3:41858731 ULK4 chr3:41288091-42003660:- 1.02 11.6 6.77E-20 Diastolic blood pressure
THYM cis rs10935120 1 rs7648990 chr3:134244390 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs7648990 chr3:134244390 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs9815354 1 rs7650227 chr3:41794937 ULK4 chr3:41288091-42003660:- 1.02 11.07 8.86E-19 Diastolic blood pressure
THYM cis rs9876781 1 rs7651407 chr3:48443816 TREX1 chr3:48501186-48509043:+ -0.28 -4.38 3.02E-5 Longevity
THYM cis rs9876781 1 rs7653691 chr3:48419689 TREX1 chr3:48501186-48509043:+ 0.28 4.36 3.31E-5 Longevity